Karim Abbasi - Kharazmi University

	All	Since 2021
Citations	1371	1346
h-index	20	20
i10-index	20	20

Brief CV

Educational records

#

Course

University

City

Country

Graduation Date

Total mean

1

B.Sc.

University of Tabriz

Tabriz

Iran

2009

2

M.Sc.

University of Sistan & Baluchestan

Zahedan

Iran

2012

3

PhD

University of Tehran

Tehran

Iran

2020

Research interests

#

Title

Start date

1

Bioinformatics

2

Computational Drug Discovery

3

AI

4

Deep Learning

5

LLM

6

Machine learning

Published books

#

Title

Author(s)

Publisher

Publish Date

1

Multivariate pattern recognition by machine learning methods

Parvin Razzaghi, Karim Abbasi, Jahan B Ghasemi

Elsevier

2023

2

Chapter 3 - Multivariate pattern recognition by machine learning methods

razzaghi parvin, Karim Abbasi, Ghasemi Jahan B

2023

Published articles

#

Paper title

Writer

Magazine title

Publish year

Publish type

Article type

1

CDCR-Rank: a computational model for predicting drug combination dose response using ranking-based optimization

Mohammadamin Moragheb, Karim Abbasi, Parvin Razzaghi, Alireza Dehghan, Sajjad Gharaghani

Bioinformatics Advances

2026

Full Text

Original Article

2

MT-ConBiFormer-GPT: multi-target molecular generation for low-data drug discovery via a contrastive BiFormer-GPT architecture and curriculum learning with cross-domain generalization

Romina Norouzi, Karim Abbasi, Parvin Razzaghi, Sajjad Gharaghani

Briefings In Bioinformatics

2026

Full Text

Original Article

3

Computational drug design in the artificial intelligence era: A systematic review of molecular representations, generative architectures, and performance assessment

Karim Abbasi, Parvin Razzaghi, Ali Gharizadeh, Amin Ghareyazi, Abbas Dehnad, Hamid R Rabiee, Mohammad RK Mofrad

Pharmacological Reviews

2026

Full Text

Original Article

4

Multi-DDA: drug–disease association prediction using a hybrid graph convolutional network with multi-modal drug representations

Alireza Dehghan, Karim Abbasi, Mohammad Rasoul Kazemi Najaf Abadi

Bioinformatics Advances

2026

Full Text

Original Article

5

DeepCompoundNet: enhancing compound–protein interaction prediction with multimodal convolutional neural networks

Farnaz Palhamkhani, Milad Alipour, Abbas Dehnad, Karim Abbasi, Parvin Razzaghi, Jahan B Ghasemi

Journal of Biomolecular Structure and Dynamics

2025

Full Text

Original Article

6

DFT_ANPD: A dual-feature two-sided attention network for anticancer natural products detection

Rambod Norouzi, Romina Norouzi, Karim Abbasi, Radin Norouzi, Parvin Razzaghi

Computers In Biology and Medicine

2025

Full Text

Original Article

7

CFSSynergy: Combining Feature-Based and Similarity-Based Methods for Drug Synergy Prediction

Fatemeh Rafiei, Hojjat Zeraati, Karim Abbasi, Parvin Razzaghi, Jahan B Ghasemi, Mahboubeh Parsaeian, Ali Masoudi-Nejad

Journal of Chemical Information and Modeling

2024

Full Text

Original Article

8

DeepDRA: Drug repurposing using multi-omics data integration with autoencoders

Taha Mohammadzadeh-Vardin, Amin Ghareyazi, Ali Gharizadeh, Karim Abbasi, Hamid R Rabiee

Plos One

2024

Full Text

Original Article

9

HGTDR: Advancing drug repurposing with heterogeneous graph transformers

Ali Gharizadeh, Karim Abbasi, Amin Ghareyazi, Mohammad RK Mofrad, Hamid R Rabiee

Bioinformatics

2024

Full Text

Original Article

10

CCL-DTI: contributing the contrastive loss in drug–target interaction prediction

Alireza Dehghan, Karim Abbasi, Parvin Razzaghi, Hossein Banadkuki, Sajjad Gharaghani

Bmc Bioinformatics

2024

Full Text

Original Article

11

A deep learning-based framework for predicting survival-associated groups in colon cancer by integrating multi-omics and clinical data

Siamak Salimy, Hossein Lanjanian, Karim Abbasi, Mahdieh Salimi, Ali Najafi, Leili Tapak, Ali Masoudi-Nejad

Heliyon

2023

Full Text

Original Article

12

TripletMultiDTI: Multimodal representation learning in drug-target interaction prediction with triplet loss function

Alireza Dehghan, Parvin Razzaghi, Karim Abbasi, Sajjad Gharaghani

Expert Systems With Applications

2023

Full Text

Original Article

13

DeepTraSynergy: drug combinations using multimodal deep learning with transformers

Fatemeh Rafiei, Hojjat Zeraati, Karim Abbasi, Jahan B Ghasemi, Mahboubeh Parsaeian, Ali Masoudi-Nejad

Bioinformatics

2023

Full Text

Original Article

14

Multimodal brain tumor detection using multimodal deep transfer learning[Formula presented]

Parvin Razzaghi, Karim Abbasi, Mahmoud Shirazi, Shima Rashidi

Applied Soft Computing

2022

Full Text

Original Article

15

Multimodal brain tumor detection using multimodal deep transfer learning

Parvin Razzaghi, Karim Abbasi, Mahmoud Shirazi, Shima Rashidi

Applied Soft Computing

2022

Full Text

16

AutoDTI++: deep unsupervised learning for Dprediction by autoencoders

Seyedeh Zahra Sajadi, Mohammad Ali Zare Chahooki, Sajjad Gharaghani, Karim Abbasi

Bmc Bioinformatics

2021

Full Text

Original Article

17

Deep learning in drug target interaction prediction: Current and future perspectives

Karim Abbasi, Parvin Razzaghi, Antti Poso, Saber Ghanbari-Ara, Ali Masoudi-Nejad

Current Medicinal Chemistry

2021

Full Text

Original Article

18

Modality adaptation in multimodal data

Parvin Razzaghi, Karim Abbasi, Mahmoud Shirazi, Niloofar Shabani

Expert Systems With Applications

2021

Full Text

Original Article

19

Learning spatial hierarchies of high-level features in deep neural network

Parvin Razzaghi, Karim Abbasi, Pegah Bayat

Journal of Visual Communication and Image Representation

2020

Full Text

Original Article

20

Incorporating part-whole hierarchies into fully convolutional network for scene parsing

Karim Abbasi, Parvin Razzaghi

Expert Systems With Applications

2020

Full Text

Original Article

21

DeepCDA: Deep cross-domain compound-protein affinity prediction through LSTM and convolutional neural networks

Karim Abbasi, Parvin Razzaghi, Antti Poso, Massoud Amanlou, Jahan B Ghasemi, Ali Masoudi-Nejad

Bioinformatics

2020

Full Text

Original Article

22

Design of a bioinformatics model to predict drug compound properties and its application in inhibition of HIV replication and BACE-1

Karim Abbasi, Ali Masoudi-Nejad

Gebsj

2020

Full Text

Original Article

23

Deep transferable compound representation across domains and tasks for low data drug discovery

Karim Abbasi, Antti Poso, Jahanbakhsh Ghasemi, Massoud Amanlou, Ali Masoudi-Nejad

Journal of Chemical Information and Modeling

2019

Full Text

Original Article

24

Transfer subspace learning via low-rank and discriminative reconstruction matrix

Parvin Razzaghi, Parisa Razzaghi, Karim Abbasi

Knowledge-Based Systems

2019

Full Text

Original Article